Public Results 2020




This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 13982 +- 131400464 0.0434 +- 0.00230.0983 +- 0.0049
Hieranoid_2 11227 +- 140337534 0.0366 +- 0.00240.0808 +- 0.0050
InParanoid_Xenfix 13147 +- 135364800 0.0353 +- 0.00220.0807 +- 0.0047
OMA_Groups 7745 +- 136208368 0.0372 +- 0.00310.0760 +- 0.0059
OMA_Pairs 10357 +- 141332081 0.0386 +- 0.00260.0842 +- 0.0053
OrthoFinder_MSA_v2.5.2 13283 +- 135381685 0.0548 +- 0.00270.1229 +- 0.0056

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 9743 +- 168115556 0.3289 +- 0.00550.6567 +- 0.0094
Hieranoid_2 9084 +- 164106979 0.3221 +- 0.00570.6478 +- 0.0098
InParanoid_Xenfix 9054 +- 164106943 0.3214 +- 0.00570.6420 +- 0.0099
OMA_Groups 5118 +- 13160667 0.2906 +- 0.00770.586 +- 0.013
OMA_Pairs 6683 +- 14685553 0.3004 +- 0.00660.607 +- 0.012
OrthoFinder_MSA_v2.5.2 11235 +- 176141479 0.3463 +- 0.00530.6771 +- 0.0086

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 1165 +- 6319875 0.590 +- 0.0170.921 +- 0.016
Hieranoid_2 1034 +- 6016831 0.566 +- 0.0180.906 +- 0.018
InParanoid_Xenfix 1072 +- 6118071 0.575 +- 0.0170.920 +- 0.016
OMA_Groups 587 +- 4610745 0.516 +- 0.0240.876 +- 0.027
OMA_Pairs 871 +- 5520018 0.551 +- 0.0200.897 +- 0.020
OrthoFinder_MSA_v2.5.2 1017 +- 5920605 0.573 +- 0.0180.915 +- 0.017

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 1861 +- 8314706070 0.2676 +- 0.00810.872 +- 0.015
Hieranoid_2 866 +- 579993418 0.261 +- 0.0120.842 +- 0.024
InParanoid_Xenfix 1433 +- 7312698014 0.2453 +- 0.00930.829 +- 0.020
OMA_Groups 186 +- 273177904 0.240 +- 0.0260.817 +- 0.056
OMA_Pairs 554 +- 467608191 0.248 +- 0.0150.832 +- 0.031
OrthoFinder_MSA_v2.5.2 981 +- 6112030296 0.278 +- 0.0120.861 +- 0.022

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 4751 +- 12912497038 0.2369 +- 0.00630.818 +- 0.014
Hieranoid_2 3776 +- 1168829243 0.2285 +- 0.00620.798 +- 0.014
InParanoid_Xenfix 3832 +- 11710842303 0.2251 +- 0.00600.806 +- 0.014
OMA_Groups 1017 +- 622758038 0.201 +- 0.0100.760 +- 0.026
OMA_Pairs 2220 +- 906721847 0.2162 +- 0.00710.784 +- 0.017
OrthoFinder_MSA_v2.5.2 5653 +- 13910505892 0.2490 +- 0.00640.834 +- 0.013

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 24253 +- 2192133475 0.2505 +- 0.00570.9230 +- 0.0095
Hieranoid_2 19624 +- 2141645831 0.2410 +- 0.00560.9193 +- 0.0098
InParanoid_Xenfix 19514 +- 2141873928 0.2380 +- 0.00550.912 +- 0.010
OMA_Groups 14238 +- 198883901 0.2328 +- 0.00550.904 +- 0.011
OMA_Pairs 18836 +- 2121731922 0.2444 +- 0.00570.9227 +- 0.0096
OrthoFinder_MSA_v2.5.2 28102 +- 2171550014 0.2496 +- 0.00670.916 +- 0.012

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of completed tree samples (out of 50k trials)Number of predicted pairwise ortholog relations Avg Robinson-Foulds distance (genetree, exp. speciestree)Fraction of incorrect trees
Domainoid+ 11604 +- 185274254 0.2692 +- 0.00850.683 +- 0.017
Hieranoid_2 10821 +- 180250360 0.2590 +- 0.00850.658 +- 0.017
InParanoid_Xenfix 9870 +- 174254208 0.2628 +- 0.00850.671 +- 0.017
OMA_Groups 3957 +- 118140239 0.2237 +- 0.00790.606 +- 0.017
OMA_Pairs 6474 +- 147202009 0.2392 +- 0.00810.638 +- 0.017
OrthoFinder_MSA_v2.5.2 14411 +- 199327013 0.289 +- 0.0110.691 +- 0.021

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project True positive rate Positive predictive value rate
Domainoid+ 0.744 +- 0.033 0.940 +- 0.029
Hieranoid_2 0.664 +- 0.034 0.945 +- 0.031
InParanoid_Xenfix 0.690 +- 0.034 0.948 +- 0.030
OMA_Groups 0.477 +- 0.034 0.935 +- 0.038
OMA_Pairs 0.651 +- 0.034 0.929 +- 0.031
OrthoFinder_MSA_v2.5.2 0.788 +- 0.033 0.949 +- 0.029

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project True positive rate Positive predictive value rate
Domainoid+ 0.6585 +- 0.0067 0.9284 +- 0.0043
Hieranoid_2 0.6034 +- 0.0069 0.9410 +- 0.0041
InParanoid_Xenfix 0.6331 +- 0.0068 0.9351 +- 0.0042
OMA_Groups 0.3679 +- 0.0068 0.9544 +- 0.0047
OMA_Pairs 0.5534 +- 0.0070 0.9206 +- 0.0049
OrthoFinder_MSA_v2.5.2 0.6746 +- 0.0066 0.9299 +- 0.0042

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of predicted pairwise ortholog relations Avg Schlicker similarity
Domainoid+ 183591 0.4639 +- 0.0011
Hieranoid_2 146551 0.4684 +- 0.0012
InParanoid_Xenfix 168863 0.4658 +- 0.0011
OMA_Groups 64039 0.4946 +- 0.0018
OMA_Pairs 113909 0.4749 +- 0.0014
OrthoFinder_MSA_v2.5.2 154934 0.4676 +- 0.0012

This is an interactive plot of the results. You can enable/disable methods by clicking on the label in the legend, or hover over the data points to get extra information.

Project Number of predicted pairwise ortholog relations Avg Schlicker similarity
Domainoid+ 219860 0.90360 +- 0.00087
Hieranoid_2 169055 0.94494 +- 0.00075
InParanoid_Xenfix 205186 0.90928 +- 0.00088
OMA_Groups 96646 0.97395 +- 0.00070
OMA_Pairs 149624 0.95481 +- 0.00073
OrthoFinder_MSA_v2.5.2 177405 0.93063 +- 0.00086