Overview of Proteinortho 6.0.13 (with --isoform)

Proteinortho 6.0.13 (with --isoform)

Proteinortho is a tool to detect orthologous genes within different species. For doing so, it compares similarities of given gene sequences and clusters them to find significant groups. The algorithm was designed to handle large-scale data and can be applied to hundreds of species at one. Details can be found in Lechner et al., BMC Bioinformatics. 2011 Apr 28;12:124.
commands used to generate this result:
proteinortho -cpus=32 data/Archaea/*fasta
proteinortho -cpus=32 --isoform=uniprot data/Bacteria/*fasta
proteinortho -cpus=32 --isoform=uniprot data/Eukaryota/*fasta
(Proteinortho version = 6.0.13)
Mapping Log
Upload Date
Thu Jan 30 08:23:56 2020
covers all genomes