Overview of BBH




BBH



Description
Bi-directional best hits based on raw scores of Smith-Waterman local alignments from http://siblings.ch.
Weblink
Predictions
Mapping Log
Upload Date
Fri Mar 22 12:30:38 2019
Coverage
covers all genomes

Hieranoid2



Description
Hierarchical orthology inference
Predictions
Mapping Log
Upload Date
Mon Oct 22 16:42:14 2018
Coverage
covers all genomes

InParanoid



Description
InParanoid 4.2
Blast 2.2.18
Predictions
Mapping Log
Upload Date
Fri Mar 15 10:00:11 2019
Coverage
covers all genomes

OMA GETHOGs 2.0



Description
Hierarchical Orthologous Groups based on pairwise orthologs inferred by OMA. The ideas and methodology are described in here, where as this version 2.0 makes use of the new bottom-up algorithm described in here.
Predictions
Mapping Log
Upload Date
Thu Sep 6 13:59:59 2018
Coverage
covers all genomes

OMA Groups 2.0



Description
OMA Groups consists of groups of genes in which all pairs are orthologs. In a graph representation with genes as nodes and orthology relations as edge, OMA groups correspond to fully connected subgraphs. Due to this definition, each OMA group includes at most one sequence per species. The primary intended application of these groups is to provide input data for phylogenetic inference.
In this instance of OMA Groups, the pairwise orthologs are based on the relations obtained with the refinements described in OMA 2.0. Additionally, the quasi-cliques that are compatible (no overlapping species) and where at least 50% of the maximal possible edges among the clusters are present, have been merged.
Predictions
Mapping Log
Upload Date
Thu Sep 6 10:20:43 2018
Coverage
covers all genomes

OrthoInspector 3.0



Description
OrthoInspector is a software allowing large-scale predictions of orthology between thousands of proteomes. It uses an original algorithm based on pairwise inparalog group comparison to detect one-to-one, one-to-many and many-to-many orthologous relations. It is made available as an independent software suite facilitating the installation and the maintenance of a database and providing several visualization tools for comprehensive orthology analysis.
Predictions
Mapping Log
Upload Date
Tue Mar 19 10:16:31 2019
Coverage
covers all genomes

PANTHER 14.1 (all)



Description
All orthologs from PANTHER trees, version 14.1.
Predictions
Mapping Log
Upload Date
Sat Mar 23 04:02:33 2019
Coverage
covers all genomes

PANTHER 14.1 (LDO only)



Description
Least-diverged orthologs from PANTHER trees, version 14.1. In this set, when there are multiple orthologs due to duplication event(s) after speciation, the pair(s) with the shortest total branch length (sequence divergence) are chosen.
Predictions
Mapping Log
Upload Date
Sat Mar 23 01:37:14 2019
Coverage
covers all genomes

RSD



Description
Reciprocal smallest distance (RSD) hits based on raw scores of Smith-Waterman local alignments from http://siblings.ch.
Predictions
Mapping Log
Upload Date
Tue Mar 26 21:32:12 2019
Coverage
covers all genomes