Benchmark Results:






Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 104382539640.0471 +- 0.00290.1019 +- 0.0058
Hieranoid2 112683700570.0335 +- 0.00230.0736 +- 0.0048
InParanoid 132653729720.0337 +- 0.00210.0774 +- 0.0045
OMA Groups 2.0 77972211550.0374 +- 0.00300.0785 +- 0.0060
OrthoInspector 3.0 126863538320.0414 +- 0.00240.0938 +- 0.0051
PANTHER 14.1 (LDO only) 75192412250.0369 +- 0.00300.0818 +- 0.0062
PANTHER 14.1 (all) 144374935330.0524 +- 0.00250.1195 +- 0.0053
RSD 116372507480.0750 +- 0.00340.1558 +- 0.0066
OMA GETHOGs 2.0 90229792100.0437 +- 0.00300.0948 +- 0.0060



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 97031018230.3373 +- 0.00560.6658 +- 0.0094
Hieranoid2 90451068440.3155 +- 0.00560.6427 +- 0.0099
InParanoid 90541069490.3217 +- 0.00570.6462 +- 0.0099
OMA Groups 2.0 5153606420.2879 +- 0.00760.580 +- 0.013
OrthoInspector 3.0 103731226280.3346 +- 0.00540.6641 +- 0.0091
PANTHER 14.1 (LDO only) 9396963410.3315 +- 0.00570.6597 +- 0.0096
PANTHER 14.1 (all) 115321534830.3777 +- 0.00560.6928 +- 0.0084
RSD 9180983740.3394 +- 0.00590.6627 +- 0.0097
OMA GETHOGs 2.0 5459868400.3007 +- 0.00760.600 +- 0.013



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 1064151140.575 +- 0.0180.915 +- 0.017
Hieranoid2 1029171490.574 +- 0.0180.906 +- 0.018
InParanoid 1070180650.577 +- 0.0170.921 +- 0.016
OMA Groups 2.0 575107420.511 +- 0.0240.875 +- 0.027
OrthoInspector 3.0 1177197790.593 +- 0.0170.923 +- 0.015
PANTHER 14.1 (LDO only) 930125070.567 +- 0.0190.915 +- 0.018
PANTHER 14.1 (all) 1158275620.617 +- 0.0170.929 +- 0.015
RSD 1031153730.584 +- 0.0180.920 +- 0.017
OMA GETHOGs 2.0 1414488710.629 +- 0.0160.927 +- 0.014




Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 389456750320.371 +- 0.0150.509 +- 0.018
Hieranoid2 336996442260.385 +- 0.0150.518 +- 0.018
InParanoid 4117125686930.382 +- 0.0150.524 +- 0.018
OMA Groups 2.0 168934042040.333 +- 0.0180.484 +- 0.024
OrthoInspector 3.0 4647108482000.379 +- 0.0150.519 +- 0.018
PANTHER 14.1 (LDO only) 286347920140.350 +- 0.0150.497 +- 0.018
PANTHER 14.1 (all) 4077162479940.390 +- 0.0150.540 +- 0.018
RSD 376557703910.367 +- 0.0150.498 +- 0.018
OMA GETHOGs 2.0 42451981549590.363 +- 0.0140.535 +- 0.018



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 314346094150.1940 +- 0.00920.469 +- 0.018
Hieranoid2 220285670700.165 +- 0.0100.446 +- 0.021
InParanoid 3770106938350.1744 +- 0.00900.430 +- 0.018
OMA Groups 2.0 105029778260.163 +- 0.0140.421 +- 0.030
OrthoInspector 3.0 520289518120.1851 +- 0.00890.461 +- 0.018
PANTHER 14.1 (LDO only) 382741719410.1995 +- 0.00960.463 +- 0.018
PANTHER 14.1 (all) 6313140358550.228 +- 0.0100.504 +- 0.018
RSD 204846201400.213 +- 0.0120.478 +- 0.022
OMA GETHOGs 2.0 41611909039720.2045 +- 0.00890.505 +- 0.018



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 1391110964410.1717 +- 0.00600.718 +- 0.016
Hieranoid2 1643114900820.1569 +- 0.00540.704 +- 0.016
InParanoid 1672416412670.1607 +- 0.00550.718 +- 0.016
OMA Groups 2.0 1271510252770.1529 +- 0.00560.684 +- 0.017
OrthoInspector 3.0 1872613645270.1642 +- 0.00550.720 +- 0.016
PANTHER 14.1 (LDO only) 1557610393530.1660 +- 0.00580.713 +- 0.016
PANTHER 14.1 (all) 1934222828600.1954 +- 0.00650.755 +- 0.015
RSD 1240110833900.1879 +- 0.00660.730 +- 0.016
OMA GETHOGs 2.0 1709468949000.1735 +- 0.00630.720 +- 0.016



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
BBH 142172365140.284 +- 0.0130.433 +- 0.018
Hieranoid2 141552495410.285 +- 0.0130.428 +- 0.018
InParanoid 138532542360.288 +- 0.0130.436 +- 0.018
OMA Groups 2.0 62891400480.264 +- 0.0130.400 +- 0.018
OrthoInspector 3.0 169762895080.294 +- 0.0130.452 +- 0.018
PANTHER 14.1 (LDO only) 149992256150.289 +- 0.0130.441 +- 0.018
PANTHER 14.1 (all) 176283519400.304 +- 0.0130.461 +- 0.018
RSD 126942285560.296 +- 0.0130.448 +- 0.018
OMA GETHOGs 2.0 86082054330.261 +- 0.0130.402 +- 0.018



Case Project pos. predictive value rate true positive rate Raw Data
APPBBH 0.9888 +- 0.02189860.5867 +- 0.0788054
 Hieranoid2 0.9922 +- 0.01513480.8533 +- 0.0566155
 InParanoid 0.9913 +- 0.01689610.7633 +- 0.0680199
 OMA Groups 2.0 0.9868 +- 0.0257880.4967 +- 0.0800148
 OrthoInspector 3.0 0.9177 +- 0.04886850.7433 +- 0.0699017
 PANTHER 14.1 (LDO only) 0.9814 +- 0.02954080.5267 +- 0.0799029
 PANTHER 14.1 (all) 0.9881 +- 0.01886340.8333 +- 0.059641
 RSD 0.9804 +- 0.03805280.3333 +- 0.0754404
 OMA GETHOGs 2.0 0.9872 +- 0.02038490.77 +- 0.0673473
ASTERBBH 0.9929 +- 0.01394990.492 +- 0.058299
 Hieranoid2 0.9888 +- 0.02189860.3115 +- 0.0540043
 InParanoid 0.9924 +- 0.01479210.4637 +- 0.0581529
 OMA Groups 2.0 0.9909 +- 0.0177370.3858 +- 0.0567663
 OrthoInspector 3.0 0.9928 +- 0.01399970.4903 +- 0.0582954
 PANTHER 14.1 (LDO only) 0.9937 +- 0.01224980.5611 +- 0.0578701
 PANTHER 14.1 (all) 0.9937 +- 0.01224980.5611 +- 0.0578701
 RSD 0.9927 +- 0.01425420.4814 +- 0.0582661
 OMA GETHOGs 2.0 0.9865 +- 0.02630710.2584 +- 0.0510485
BAMBIBBH 0.9762 +- 0.04610790.8632 +- 0.0977382
 Hieranoid2 0.9714 +- 0.05519410.7158 +- 0.128269
 InParanoid 0.9688 +- 0.06028520.6526 +- 0.135406
 OMA Groups 2.0 0.9661 +- 0.06530480.6 +- 0.13932
 OrthoInspector 3.0 0.9775 +- 0.04354730.9158 +- 0.0789751
 PANTHER 14.1 (LDO only) 0.7143 +- 0.4732860.0526316 +- 0.0635028
 PANTHER 14.1 (all) 0.7143 +- 0.4732860.0526316 +- 0.0635028
 RSD 0.9773 +- 0.04403640.9053 +- 0.0832829
 OMA GETHOGs 2.0 0.9661 +- 0.06530480.6 +- 0.13932
BARBBH 0.8259 +- 0.04522850.5638 +- 0.0488748
 Hieranoid2 0.9948 +- 0.008298930.7257 +- 0.0439735
 InParanoid 0.9468 +- 0.02461110.7649 +- 0.0417967
 OMA Groups 2.0 0.9946 +- 0.0106520.4614 +- 0.0491311
 OrthoInspector 3.0 0.7799 +- 0.04096310.775 +- 0.0411572
 PANTHER 14.1 (LDO only) 0.9957 +- 0.00850310.579 +- 0.0486589
 PANTHER 14.1 (all) 0.997 +- 0.005842020.8445 +- 0.0357145
 RSD 0.8674 +- 0.04383130.5044 +- 0.049276
 OMA GETHOGs 2.0 0.995 +- 0.009824470.5006 +- 0.0492779
CASPBBH 0.8889 +- 0.2053230.2963 +- 0.172239
 Hieranoid2 0.9259 +- 0.1397050.463 +- 0.188083
 InParanoid 0.9459 +- 0.1030430.6481 +- 0.180132
 OMA Groups 2.0 0.84 +- 0.2032360.3889 +- 0.183885
 OrthoInspector 3.0 0.9355 +- 0.1223040.537 +- 0.188083
 PANTHER 14.1 (LDO only) 0.875 +- 0.2291770.2593 +- 0.165301
 PANTHER 14.1 (all) 0.8679 +- 0.128910.8519 +- 0.134
 RSD 0.8889 +- 0.2053230.2963 +- 0.172239
 OMA GETHOGs 2.0 0.64 +- 0.1536320.8889 +- 0.118543
CITEBBH 0.8416 +- 0.1007070.445 +- 0.0996744
 Hieranoid2 0.9794 +- 0.03999360.4974 +- 0.100281
 InParanoid 0.8704 +- 0.08959090.4921 +- 0.10027
 OMA Groups 2.0 0.9726 +- 0.05295810.3717 +- 0.0969261
 OrthoInspector 3.0 0.873 +- 0.08221890.5759 +- 0.0991196
 PANTHER 14.1 (LDO only) 0.9811 +- 0.03663050.5445 +- 0.0998843
 PANTHER 14.1 (all) 0.9789 +- 0.03345060.7277 +- 0.0892751
 RSD 0.7723 +- 0.1156650.4084 +- 0.0985843
 OMA GETHOGs 2.0 0.974 +- 0.05024370.3927 +- 0.0979447
ClusterinBBH 0.9692 +- 0.05937250.7 +- 0.133894
 Hieranoid2 0.9714 +- 0.05519410.7556 +- 0.125566
 InParanoid 0.9718 +- 0.0544280.7667 +- 0.123578
 OMA Groups 2.0 0.963 +- 0.07123570.5778 +- 0.144311
 OrthoInspector 3.0 0.9722 +- 0.05368290.7778 +- 0.121471
 PANTHER 14.1 (LDO only) 0.9672 +- 0.06319990.6556 +- 0.13884
 PANTHER 14.1 (all) 0.96 +- 0.062720.8 +- 0.116872
 RSD 0.9692 +- 0.05937250.7 +- 0.133894
 OMA GETHOGs 2.0 0.973 +- 0.05225230.8 +- 0.116872
GH14BBH 0.4286 +- 0.5184590.25 +- 0.346482
 Hieranoid2 0.75 +- 0.4243520.5 +- 0.400083
 InParanoid 0.75 +- 0.4243520.5 +- 0.400083
 OMA Groups 2.0 0.6667 +- 0.5334440.3333 +- 0.377202
 OrthoInspector 3.0 0.75 +- 0.4243520.5 +- 0.400083
 PANTHER 14.1 (LDO only) 0.6667 +- 0.5334440.3333 +- 0.377202
 PANTHER 14.1 (all) 0.6 +- 0.4294140.5 +- 0.400083
 RSD 0.6667 +- 0.5334440.3333 +- 0.377202
 OMA GETHOGs 2.0 0.75 +- 0.4243520.5 +- 0.400083
HOXBBH 0.9531 +- 0.07323640.3333 +- 0.0965916
 Hieranoid2 0.9672 +- 0.06319990.3224 +- 0.0957704
 InParanoid 0.9623 +- 0.07255340.2787 +- 0.0918684
 OMA Groups 2.0 0.963 +- 0.07123570.2842 +- 0.0924127
 OrthoInspector 3.0 0.8291 +- 0.09647020.5301 +- 0.102266
 PANTHER 14.1 (LDO only) 0.9692 +- 0.05937250.3443 +- 0.0973544
 PANTHER 14.1 (all) 0.8936 +- 0.08814920.459 +- 0.102106
 RSD 0.7255 +- 0.1732130.2022 +- 0.0822946
 OMA GETHOGs 2.0 0.9701 +- 0.05762770.3552 +- 0.09806
MAPTBBH 0.9167 +- 0.1276840.541 +- 0.176853
 Hieranoid2 0.9487 +- 0.09790160.6066 +- 0.173373
 InParanoid 0.9535 +- 0.08901750.6721 +- 0.166603
 OMA Groups 2.0 0.9412 +- 0.1118520.5246 +- 0.177235
 OrthoInspector 3.0 0.9545 +- 0.08704250.6885 +- 0.164353
 PANTHER 14.1 (LDO only) 0.9487 +- 0.09790160.6066 +- 0.173373
 PANTHER 14.1 (all) 0.9487 +- 0.09790160.6066 +- 0.173373
 RSD 0.9143 +- 0.1311610.5246 +- 0.177235
 OMA GETHOGs 2.0 0.9487 +- 0.09790160.6066 +- 0.173373
NOXBBH 0.9747 +- 0.02828310.4925 +- 0.0639891
 Hieranoid2 0.8635 +- 0.04615660.7825 +- 0.0528012
 InParanoid 0.9486 +- 0.03272440.7079 +- 0.0582024
 OMA Groups 2.0 0.9923 +- 0.01496150.5522 +- 0.063646
 OrthoInspector 3.0 0.9224 +- 0.03598240.8358 +- 0.0474134
 PANTHER 14.1 (LDO only) 0.9918 +- 0.01593460.5181 +- 0.0639543
 PANTHER 14.1 (all) 0.9649 +- 0.02319430.9957 +- 0.00834025
 RSD 0.9821 +- 0.02452660.4691 +- 0.0638738
 OMA GETHOGs 2.0 0.9626 +- 0.02626620.823 +- 0.0488477
POPBBH 0.9903 +- 0.01884550.9071 +- 0.0535299
 Hieranoid2 0.9912 +- 0.01726830.9912 +- 0.0172683
 InParanoid 0.9909 +- 0.0177370.9646 +- 0.0340708
 OMA Groups 2.0 0.9896 +- 0.02020510.8451 +- 0.0667051
 OrthoInspector 3.0 0.9905 +- 0.01857760.9204 +- 0.04992
 PANTHER 14.1 (LDO only) 0.9901 +- 0.0192150.8894 +- 0.057833
 PANTHER 14.1 (all) 0.8894 +- 0.0578330.8894 +- 0.057833
 RSD 0.961 +- 0.03749030.8717 +- 0.0616653
 OMA GETHOGs 2.0 0.9896 +- 0.02020510.8451 +- 0.0667051
PSENBBH 0.994 +- 0.01170140.4978 +- 0.0536629
 Hieranoid2 0.9961 +- 0.007596860.7691 +- 0.0452272
 InParanoid 0.9797 +- 0.01681940.7946 +- 0.043359
 OMA Groups 2.0 0.9919 +- 0.01574260.3688 +- 0.0517833
 OrthoInspector 3.0 0.9821 +- 0.0148140.9055 +- 0.0313888
 PANTHER 14.1 (LDO only) 0.9929 +- 0.01394990.4168 +- 0.0529149
 PANTHER 14.1 (all) 0.9962 +- 0.007396240.7901 +- 0.0437071
 RSD 0.985 +- 0.01847250.4918 +- 0.0536561
 OMA GETHOGs 2.0 0.9947 +- 0.008444850.8456 +- 0.0387827
RPSBBH 0.9429 +- 0.1087530.4925 +- 0.169299
 Hieranoid2 0.9286 +- 0.1349070.3881 +- 0.16502
 InParanoid 0.9487 +- 0.09790160.5522 +- 0.168392
 OMA Groups 2.0 0.9 +- 0.1859420.2687 +- 0.150104
 OrthoInspector 3.0 0.9512 +- 0.09324860.5821 +- 0.167021
 PANTHER 14.1 (LDO only) 0.9286 +- 0.1349070.3881 +- 0.16502
 PANTHER 14.1 (all) 0.9623 +- 0.07255340.7612 +- 0.144379
 RSD 0.9444 +- 0.1058210.5075 +- 0.169299
 OMA GETHOGs 2.0 0.92 +- 0.1503970.3433 +- 0.160786
SERCBBH 0.9917 +- 0.01613130.3061 +- 0.0456251
 Hieranoid2 0.9968 +- 0.006173190.8061 +- 0.0391362
 InParanoid 0.9965 +- 0.006758450.736 +- 0.0436385
 OMA Groups 2.0 0.9894 +- 0.02073990.2372 +- 0.0421117
 OrthoInspector 3.0 0.997 +- 0.005894710.8444 +- 0.0358846
 PANTHER 14.1 (LDO only) 0.976 +- 0.02943790.2589 +- 0.0433643
 PANTHER 14.1 (all) 0.9816 +- 0.01404470.8827 +- 0.0318601
 RSD 0.9919 +- 0.0158060.3125 +- 0.0458854
 OMA GETHOGs 2.0 0.9701 +- 0.01739860.9107 +- 0.0282288
SUMFBBH 0.9412 +- 0.09132650.9057 +- 0.111292
 Hieranoid2 0.9623 +- 0.07255340.9623 +- 0.0725534
 InParanoid 0.9623 +- 0.07255340.9623 +- 0.0725534
 OMA Groups 2.0 0.9565 +- 0.08334430.8302 +- 0.142957
 OrthoInspector 3.0 0.9623 +- 0.07255340.9623 +- 0.0725534
 PANTHER 14.1 (LDO only) 0.9623 +- 0.07255340.9623 +- 0.0725534
 PANTHER 14.1 (all) 0.9623 +- 0.07255340.9623 +- 0.0725534
 RSD 0.9412 +- 0.09132650.9057 +- 0.111292
 OMA GETHOGs 2.0 0.9583 +- 0.07994710.8679 +- 0.12891
TRFEBBH 0.9804 +- 0.03107020.8065 +- 0.0802969
 Hieranoid2 0.9892 +- 0.02096190.9892 +- 0.0209619
 InParanoid 0.9887 +- 0.0220210.9409 +- 0.0479419
 OMA Groups 2.0 0.9854 +- 0.02840380.7258 +- 0.090668
 OrthoInspector 3.0 0.9886 +- 0.02227170.9301 +- 0.05182
 PANTHER 14.1 (LDO only) 0.9867 +- 0.02595870.7957 +- 0.0819453
 PANTHER 14.1 (all) 0.8932 +- 0.05964720.9892 +- 0.0209619
 RSD 0.9799 +- 0.03189570.7849 +- 0.0835041
 OMA GETHOGs 2.0 0.9886 +- 0.02214540.9355 +- 0.0499308
VATBBBH 0.992 +- 0.01555520.6898 +- 0.0674869
 Hieranoid2 0.9923 +- 0.01501880.7147 +- 0.0658779
 InParanoid 0.9939 +- 0.01184270.9086 +- 0.0420442
 OMA Groups 2.0 0.9895 +- 0.0205230.5208 +- 0.0728806
 OrthoInspector 3.0 0.994 +- 0.01180710.9114 +- 0.041465
 PANTHER 14.1 (LDO only) 0.9899 +- 0.01959920.5457 +- 0.0726383
 PANTHER 14.1 (all) 0.994 +- 0.01170140.9197 +- 0.0396531
 RSD 0.9886 +- 0.02227170.4792 +- 0.0728806
 OMA GETHOGs 2.0 0.9938 +- 0.01209860.8892 +- 0.0457923



Case Project pos. predictive value rate true positive rate Raw Data
TreeFamABBH 0.9534 +- 0.003726270.4765 +- 0.00623945
 Hieranoid2 0.9344 +- 0.003777410.6267 +- 0.00604249
 InParanoid 0.9362 +- 0.00368480.6427 +- 0.00598654
 OMA Groups 2.0 0.9513 +- 0.004217050.3868 +- 0.00608412
 OrthoInspector 3.0 0.9321 +- 0.003685430.6781 +- 0.00583665
 PANTHER 14.1 (LDO only) 0.9545 +- 0.003837850.4391 +- 0.00619961
 PANTHER 14.1 (all) 0.8818 +- 0.004547620.6937 +- 0.00575827
 RSD 0.9498 +- 0.004095880.4211 +- 0.00616799
 OMA GETHOGs 2.0 0.8355 +- 0.005280340.6428 +- 0.00598593



Project # ortholog relations avg Schlicker Raw Data
BBH 1461090.95032 +- 0.00078
Hieranoid2 1621840.94602 +- 0.00076
InParanoid 2031480.91339 +- 0.00086
OMA Groups 2.0 969470.97511 +- 0.00068
OrthoInspector 3.0 2041000.92526 +- 0.00080
PANTHER 14.1 (LDO only) 1118470.96599 +- 0.00073
PANTHER 14.1 (all) 1992080.92901 +- 0.00082
RSD 1390530.94503 +- 0.00085
OMA GETHOGs 2.0 4923010.75774 +- 0.00082



Project # ortholog relations avg Schlicker Raw Data
BBH 843540.5157 +- 0.0015
Hieranoid2 1291970.4971 +- 0.0012
InParanoid 1529210.4944 +- 0.0011
OMA Groups 2.0 582310.5224 +- 0.0019
OrthoInspector 3.0 1542520.4967 +- 0.0011
PANTHER 14.1 (LDO only) 725210.5205 +- 0.0017
PANTHER 14.1 (all) 1862630.4857 +- 0.0010
RSD 773200.5140 +- 0.0016
OMA GETHOGs 2.0 9279000.42216 +- 0.00042