Benchmark Results:






Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 100003700570.0352 +- 0.00250.0772 +- 0.0052
OMA Groups 2.0 77972211550.0366 +- 0.00300.0754 +- 0.0059
OMA GETHOGs 2.0 90229792100.0436 +- 0.00290.0959 +- 0.0061



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 90451068440.3196 +- 0.00570.6441 +- 0.0099
OMA Groups 2.0 5153606420.2853 +- 0.00760.577 +- 0.013
OMA GETHOGs 2.0 5459868400.3053 +- 0.00770.599 +- 0.013



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 1029171490.582 +- 0.0180.918 +- 0.017
OMA Groups 2.0 575107420.517 +- 0.0240.885 +- 0.026
OMA GETHOGs 2.0 1414488710.637 +- 0.0160.938 +- 0.013




Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 397049629540.350 +- 0.0170.368 +- 0.017
OMA Groups 2.0 195619593480.241 +- 0.0190.254 +- 0.019
OMA GETHOGs 2.0 4983763395200.294 +- 0.0160.325 +- 0.017



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 212442438830.3114 +- 0.00900.845 +- 0.015
OMA Groups 2.0 100916670070.290 +- 0.0140.790 +- 0.025
OMA GETHOGs 2.0 4352721567050.3368 +- 0.00790.880 +- 0.012



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 195868959730.1660 +- 0.00710.529 +- 0.018
OMA Groups 2.0 152246209830.1673 +- 0.00730.524 +- 0.018
OMA GETHOGs 2.0 2073247050220.1778 +- 0.00740.545 +- 0.018



Project # completed tree samplings (of 50k trials) # uploaded ortholog pairs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
00n.a.n.a.
Hieranoid2 163691788640.229 +- 0.0100.454 +- 0.018
OMA Groups 2.0 68871057940.2082 +- 0.00980.416 +- 0.018
OMA GETHOGs 2.0 98931535400.230 +- 0.0100.444 +- 0.018



Case Project pos. predictive value rate true positive rate Raw Data
APP 0.5 +- 0.6929650.00666667 +- 0.013023
 Hieranoid2 0.9922 +- 0.01513480.8533 +- 0.0566155
 OMA Groups 2.0 0.9868 +- 0.0257880.4967 +- 0.0800148
 OMA GETHOGs 2.0 0.9872 +- 0.02038490.77 +- 0.0673473
ASTER 0.5 +- 0.6929650.00353982 +- 0.00692576
 Hieranoid2 0.9888 +- 0.02189860.3115 +- 0.0540043
 OMA Groups 2.0 0.9909 +- 0.0177370.3858 +- 0.0567663
 OMA GETHOGs 2.0 0.9865 +- 0.02630710.2584 +- 0.0510485
BAMBI 0.5 +- 0.6929650.0210526 +- 0.0408264
 Hieranoid2 0.9714 +- 0.05519410.7158 +- 0.128269
 OMA Groups 2.0 0.9661 +- 0.06530480.6 +- 0.13932
 OMA GETHOGs 2.0 0.9661 +- 0.06530480.6 +- 0.13932
BAR 0.5 +- 0.6929650.00252845 +- 0.00494949
 Hieranoid2 0.9948 +- 0.008298930.7257 +- 0.0439735
 OMA Groups 2.0 0.9946 +- 0.0106520.4614 +- 0.0491311
 OMA GETHOGs 2.0 0.995 +- 0.009824470.5006 +- 0.0492779
CASP 0.5 +- 0.6929650.037037 +- 0.0712357
 Hieranoid2 0.9259 +- 0.1397050.463 +- 0.188083
 OMA Groups 2.0 0.84 +- 0.2032360.3889 +- 0.183885
 OMA GETHOGs 2.0 0.64 +- 0.1536320.8889 +- 0.118543
CITE 0.5 +- 0.6929650.0104712 +- 0.020416
 Hieranoid2 0.9794 +- 0.03999360.4974 +- 0.100281
 OMA Groups 2.0 0.9726 +- 0.05295810.3717 +- 0.0969261
 OMA GETHOGs 2.0 0.974 +- 0.05024370.3927 +- 0.0979447
Clusterin 0.5 +- 0.6929650.0222222 +- 0.0430687
 Hieranoid2 0.9714 +- 0.05519410.7556 +- 0.125566
 OMA Groups 2.0 0.963 +- 0.07123570.5778 +- 0.144311
 OMA GETHOGs 2.0 0.973 +- 0.05225230.8 +- 0.116872
GH14 0.5 +- 0.6929650.1667 +- 0.298205
 Hieranoid2 0.75 +- 0.4243520.5 +- 0.400083
 OMA Groups 2.0 0.6667 +- 0.5334440.3333 +- 0.377202
 OMA GETHOGs 2.0 0.75 +- 0.4243520.5 +- 0.400083
HOX 0.5 +- 0.6929650.010929 +- 0.0213037
 Hieranoid2 0.9672 +- 0.06319990.3224 +- 0.0957704
 OMA Groups 2.0 0.963 +- 0.07123570.2842 +- 0.0924127
 OMA GETHOGs 2.0 0.9701 +- 0.05762770.3552 +- 0.09806
MAPT 0.5 +- 0.6929650.0327869 +- 0.0631999
 Hieranoid2 0.9487 +- 0.09790160.6066 +- 0.173373
 OMA Groups 2.0 0.9412 +- 0.1118520.5246 +- 0.177235
 OMA GETHOGs 2.0 0.9487 +- 0.09790160.6066 +- 0.173373
NOX 0.5 +- 0.6929650.00426439 +- 0.00834025
 Hieranoid2 0.8635 +- 0.04615660.7825 +- 0.0528012
 OMA Groups 2.0 0.9923 +- 0.01496150.5522 +- 0.063646
 OMA GETHOGs 2.0 0.9626 +- 0.02626620.823 +- 0.0488477
POP 0.5 +- 0.6929650.00884956 +- 0.0172683
 Hieranoid2 0.9912 +- 0.01726830.9912 +- 0.0172683
 OMA Groups 2.0 0.9896 +- 0.02020510.8451 +- 0.0667051
 OMA GETHOGs 2.0 0.9896 +- 0.02020510.8451 +- 0.0667051
PSEN 0.5 +- 0.6929650.0029985 +- 0.00586823
 Hieranoid2 0.9961 +- 0.007596860.7691 +- 0.0452272
 OMA Groups 2.0 0.9919 +- 0.01574260.3688 +- 0.0517833
 OMA GETHOGs 2.0 0.9947 +- 0.008444850.8456 +- 0.0387827
RPS 0.5 +- 0.6929650.0298507 +- 0.0576277
 Hieranoid2 0.9286 +- 0.1349070.3881 +- 0.16502
 OMA Groups 2.0 0.9 +- 0.1859420.2687 +- 0.150104
 OMA GETHOGs 2.0 0.92 +- 0.1503970.3433 +- 0.160786
SERC 0.5 +- 0.6929650.00255102 +- 0.00499362
 Hieranoid2 0.9968 +- 0.006173190.8061 +- 0.0391362
 OMA Groups 2.0 0.9894 +- 0.02073990.2372 +- 0.0421117
 OMA GETHOGs 2.0 0.9701 +- 0.01739860.9107 +- 0.0282288
SUMF 0.5 +- 0.6929650.0377359 +- 0.0725534
 Hieranoid2 0.9623 +- 0.07255340.9623 +- 0.0725534
 OMA Groups 2.0 0.9565 +- 0.08334430.8302 +- 0.142957
 OMA GETHOGs 2.0 0.9583 +- 0.07994710.8679 +- 0.12891
TRFE 0.5 +- 0.6929650.0107527 +- 0.0209619
 Hieranoid2 0.9892 +- 0.02096190.9892 +- 0.0209619
 OMA Groups 2.0 0.9854 +- 0.02840380.7258 +- 0.090668
 OMA GETHOGs 2.0 0.9886 +- 0.02214540.9355 +- 0.0499308
VATB 0.5 +- 0.6929650.00554017 +- 0.0108285
 Hieranoid2 0.9923 +- 0.01501880.7147 +- 0.0658779
 OMA Groups 2.0 0.9895 +- 0.0205230.5208 +- 0.0728806
 OMA GETHOGs 2.0 0.9938 +- 0.01209860.8892 +- 0.0457923



Case Project pos. predictive value rate true positive rate Raw Data
TreeFamA 0.5 +- 0.6929654.0625e-05 +- 7.96228e-05
 Hieranoid2 0.9344 +- 0.003777410.6267 +- 0.00604249
 OMA Groups 2.0 0.9513 +- 0.004217050.3868 +- 0.00608412
 OMA GETHOGs 2.0 0.8355 +- 0.005280340.6428 +- 0.00598593