Benchmark Selection for OMA Pairs (Refset5)




The predictions have successfully been uploaded to the benchmarking service.

Select from the available benchmarks and against which standard orthology inference project you would like to compare your predictions.


Phylogeny-Based Definition Benchmarks



Altenhoff and Dessimoz, 2009, Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods PLoS Computational Biology,5(1): e1000262
Eukaryotic Species Tree Discordance Benchmark


























Fungi Species Tree Discordance Benchmark


























Bacteria Species Tree Discordance Benchmark

Generalized Species Tree Discordance Benchmark based on all genomes in the QfO Species Phylogeny (L90)


























Generalized Species Tree Discordance Benchmark on the eukaryotic genomes in the QfO Species Phylogeny (L90)


























Generalized Species Tree Discordance Benchmark on the vertebrate genomes in the QfO Species Phylogeny (L90)


























Generalized Species Tree Discordance Benchmark on the fungal genomes in the QfO Species Phylogeny (L90)


























Agreement with Reference Gene Phylogenies: SwissTree













































Agreement with Reference Gene Phylogenies: TreeFam-A






























Function-Based Definition Benchmarks



Gene Ontology Benchmark
































Enzyme Classification (EC) Benchmark