Benchmark Results:






Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 89399870830.0435 +- 0.00300.0937 +- 0.0060
OMA Groups 77962194150.0386 +- 0.00310.0779 +- 0.0059
OrthoInspector 3.0 100003500760.0435 +- 0.00280.0964 +- 0.0058
OMA Pairs 100003824870.0417 +- 0.00280.0894 +- 0.0056



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 5471871770.3060 +- 0.00760.607 +- 0.013
OMA Groups 5163610290.2930 +- 0.00760.591 +- 0.013
OrthoInspector 3.0 100001229150.3433 +- 0.00560.6719 +- 0.0092
OMA Pairs 6680857370.3062 +- 0.00660.620 +- 0.012



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 1418491370.628 +- 0.0160.938 +- 0.013
OMA Groups 549106760.517 +- 0.0250.880 +- 0.027
OrthoInspector 3.0 1180197920.602 +- 0.0160.938 +- 0.014
OMA Pairs 866200190.557 +- 0.0200.902 +- 0.020




Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 4911737724570.293 +- 0.0160.321 +- 0.017
OMA Groups 189319439590.259 +- 0.0190.273 +- 0.020
OrthoInspector 3.0 544757258620.336 +- 0.0160.373 +- 0.017
OMA Pairs 352651332690.306 +- 0.0160.326 +- 0.017



Status: sampling possible trees for OMA GETHOGs

We are still computing the results ...




Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 1995345900760.1914 +- 0.00770.569 +- 0.018
OMA Groups 147876111420.1694 +- 0.00700.541 +- 0.018
OrthoInspector 3.0 210358039920.1797 +- 0.00750.550 +- 0.018
OMA Pairs 1943018851450.1784 +- 0.00750.545 +- 0.018



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 98941544300.229 +- 0.0100.454 +- 0.018
OMA Groups 69291062940.204 +- 0.0100.414 +- 0.018
OrthoInspector 3.0 192432054820.238 +- 0.0100.466 +- 0.018
OMA Pairs 108711502880.221 +- 0.0100.440 +- 0.018



Case Project pos. predictive value rate true positive rate Raw Data
APPOMA GETHOGs 0.9876 +- 0.01971530.7636 +- 0.0665685
 OMA Groups 0.9873 +- 0.02465240.4984 +- 0.078337
 OrthoInspector 3.0 0.9216 +- 0.04666690.7508 +- 0.0677698
 OMA Pairs 0.9861 +- 0.02207150.6805 +- 0.0730541
ASTEROMA GETHOGs 0.9865 +- 0.02630710.2584 +- 0.0510485
 OMA Groups 0.9909 +- 0.0177370.3858 +- 0.0567663
 OrthoInspector 3.0 0.9928 +- 0.01399970.4903 +- 0.0582954
 OMA Pairs 0.9893 +- 0.02084980.3274 +- 0.0547237
BAMBIOMA GETHOGs 0.9661 +- 0.06530480.5327 +- 0.133696
 OMA Groups 0.9661 +- 0.06530480.5327 +- 0.133696
 OrthoInspector 3.0 0.978 +- 0.0426010.8318 +- 0.100237
 OMA Pairs 0.9692 +- 0.05937250.5888 +- 0.131854
BAROMA GETHOGs 0.9951 +- 0.009655060.4975 +- 0.048696
 OMA Groups 0.9893 +- 0.01470420.458 +- 0.0485245
 OrthoInspector 3.0 0.7752 +- 0.04033360.7877 +- 0.0398309
 OMA Pairs 0.9717 +- 0.02146270.5506 +- 0.0484465
CASPOMA GETHOGs 0.64 +- 0.1536320.8889 +- 0.118543
 OMA Groups 0.8261 +- 0.2190720.3519 +- 0.180132
 OrthoInspector 3.0 0.9355 +- 0.1223040.537 +- 0.188083
 OMA Pairs 0.6825 +- 0.1625580.7963 +- 0.151919
CITEOMA GETHOGs 0.9792 +- 0.0404060.4292 +- 0.0927095
 OMA Groups 0.9783 +- 0.04214320.411 +- 0.0921554
 OrthoInspector 3.0 0.8734 +- 0.07332290.6301 +- 0.0904246
 OMA Pairs 0.9074 +- 0.07731220.4475 +- 0.0931344
ClusterinOMA GETHOGs 0.9806 +- 0.03768710.8347 +- 0.0935984
 OMA Groups 0.9744 +- 0.04960780.6281 +- 0.121788
 OrthoInspector 3.0 0.9798 +- 0.03919410.8017 +- 0.100481
 OMA Pairs 0.9806 +- 0.03768710.8347 +- 0.0935984
GH14OMA GETHOGs 0.75 +- 0.4243520.5 +- 0.400083
 OMA Groups 0.6667 +- 0.5334440.3333 +- 0.377202
 OrthoInspector 3.0 0.75 +- 0.4243520.5 +- 0.400083
 OMA Pairs 0.75 +- 0.4243520.5 +- 0.400083
HOXOMA GETHOGs 0.9683 +- 0.06122670.3427 +- 0.0986049
 OMA Groups 0.9608 +- 0.07534050.2753 +- 0.092797
 OrthoInspector 3.0 0.823 +- 0.099520.5225 +- 0.103775
 OMA Pairs 0.9355 +- 0.08648240.3258 +- 0.0973745
MAPTOMA GETHOGs 0.9649 +- 0.06755460.6707 +- 0.143851
 OMA Groups 0.9649 +- 0.06755460.6707 +- 0.143851
 OrthoInspector 3.0 0.9677 +- 0.06219780.7317 +- 0.135624
 OMA Pairs 0.9649 +- 0.06755460.6707 +- 0.143851
NOXOMA GETHOGs 0.9626 +- 0.02626620.823 +- 0.0488477
 OMA Groups 0.9563 +- 0.03567580.5139 +- 0.0639717
 OrthoInspector 3.0 0.9265 +- 0.03520260.8337 +- 0.0476594
 OMA Pairs 0.9807 +- 0.0200620.7569 +- 0.0549006
POPOMA GETHOGs 0.9896 +- 0.02020510.8451 +- 0.0667051
 OMA Groups 0.9323 +- 0.05025940.792 +- 0.0748315
 OrthoInspector 3.0 0.9905 +- 0.01857760.9204 +- 0.04992
 OMA Pairs 0.9526 +- 0.04271720.8009 +- 0.0736298
PSENOMA GETHOGs 0.9946 +- 0.008673750.8109 +- 0.0417139
 OMA Groups 0.9917 +- 0.0161980.353 +- 0.0509125
 OrthoInspector 3.0 0.9823 +- 0.01462550.904 +- 0.0313851
 OMA Pairs 0.991 +- 0.0123740.6529 +- 0.0507148
RPSOMA GETHOGs 0.9643 +- 0.06873870.4576 +- 0.127126
 OMA Groups 0.931 +- 0.1304280.2288 +- 0.107189
 OrthoInspector 3.0 0.971 +- 0.05598230.5678 +- 0.126407
 OMA Pairs 0.9672 +- 0.06319990.5 +- 0.127585
SERCOMA GETHOGs 0.9701 +- 0.01739860.9107 +- 0.0282288
 OMA Groups 0.9894 +- 0.02073990.2372 +- 0.0421117
 OrthoInspector 3.0 0.997 +- 0.005894710.8444 +- 0.0358846
 OMA Pairs 0.9881 +- 0.01241870.7398 +- 0.0434338
SUMFOMA GETHOGs 0.9545 +- 0.08704250.7925 +- 0.154411
 OMA Groups 0.9623 +- 0.07255340.9623 +- 0.0725534
 OrthoInspector 3.0 0.9623 +- 0.07255340.9623 +- 0.0725534
 OMA Pairs 0.9615 +- 0.07392060.9434 +- 0.0879839
TRFEOMA GETHOGs 0.9875 +- 0.02434660.9349 +- 0.0525974
 OMA Groups 0.9839 +- 0.03135690.7219 +- 0.0955367
 OrthoInspector 3.0 0.9875 +- 0.02434660.9349 +- 0.0525974
 OMA Pairs 0.9875 +- 0.02434660.9349 +- 0.0525974
VATBOMA GETHOGs 0.9943 +- 0.0112320.8941 +- 0.0433643
 OMA Groups 0.9895 +- 0.0204160.4884 +- 0.0704317
 OrthoInspector 3.0 0.9944 +- 0.01098020.9147 +- 0.0393516
 OMA Pairs 0.994 +- 0.01166650.8605 +- 0.0488229



Case Project pos. predictive value rate true positive rate Raw Data
TreeFamAOMA GETHOGs 0.8391 +- 0.005261750.6394 +- 0.00600269
 OMA Groups 0.951 +- 0.00420410.3917 +- 0.00610231
 OrthoInspector 3.0 0.932 +- 0.003673730.6839 +- 0.00581242
 OMA Pairs 0.9171 +- 0.004391620.5648 +- 0.00619785



Project # ortholog relations avg Schlicker Raw Data
OMA GETHOGs 4632970.77490 +- 0.00081
OMA Groups 961070.97526 +- 0.00068
OrthoInspector 3.0 2010950.92738 +- 0.00080
OMA Pairs 1471580.95904 +- 0.00071