Benchmark Results:






Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 89399870830.0435 +- 0.00300.0937 +- 0.0060
OMA Groups 77962194150.0386 +- 0.00310.0779 +- 0.0059
OMA Pairs 100003824870.0417 +- 0.00280.0894 +- 0.0056



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 5471871770.3060 +- 0.00760.607 +- 0.013
OMA Groups 5163610290.2930 +- 0.00760.591 +- 0.013
OMA Pairs 6680857370.3062 +- 0.00660.620 +- 0.012



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 1418491370.628 +- 0.0160.938 +- 0.013
OMA Groups 549106760.517 +- 0.0250.880 +- 0.027
OMA Pairs 866200190.557 +- 0.0200.902 +- 0.020




Status: sampling possible trees for OMA GETHOGs

We are still computing the results ...




Status: sampling possible trees for OMA GETHOGs

We are still computing the results ...




Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 1995345900760.1914 +- 0.00770.569 +- 0.018
OMA Groups 147876111420.1694 +- 0.00700.541 +- 0.018
OMA Pairs 1943018851450.1784 +- 0.00750.545 +- 0.018



Project # completed tree samplings (of 50k trials) # uploaded orthologs avg RF distance( genetree , speciestree ) avg fraction incorrect trees Raw Data
OMA GETHOGs 98941544300.229 +- 0.0100.454 +- 0.018
OMA Groups 69291062940.204 +- 0.0100.414 +- 0.018
OMA Pairs 108711502880.221 +- 0.0100.440 +- 0.018



Case Project pos. predictive value rate true positive rate Raw Data
APPOMA GETHOGs 0.9876 +- 0.01971530.7636 +- 0.0665685
 OMA Groups 0.9873 +- 0.02465240.4984 +- 0.078337
 OMA Pairs 0.9861 +- 0.02207150.6805 +- 0.0730541
ASTEROMA GETHOGs 0.9865 +- 0.02630710.2584 +- 0.0510485
 OMA Groups 0.9909 +- 0.0177370.3858 +- 0.0567663
 OMA Pairs 0.9893 +- 0.02084980.3274 +- 0.0547237
BAMBIOMA GETHOGs 0.9661 +- 0.06530480.5327 +- 0.133696
 OMA Groups 0.9661 +- 0.06530480.5327 +- 0.133696
 OMA Pairs 0.9692 +- 0.05937250.5888 +- 0.131854
BAROMA GETHOGs 0.9951 +- 0.009655060.4975 +- 0.048696
 OMA Groups 0.9893 +- 0.01470420.458 +- 0.0485245
 OMA Pairs 0.9717 +- 0.02146270.5506 +- 0.0484465
CASPOMA GETHOGs 0.64 +- 0.1536320.8889 +- 0.118543
 OMA Groups 0.8261 +- 0.2190720.3519 +- 0.180132
 OMA Pairs 0.6825 +- 0.1625580.7963 +- 0.151919
CITEOMA GETHOGs 0.9792 +- 0.0404060.4292 +- 0.0927095
 OMA Groups 0.9783 +- 0.04214320.411 +- 0.0921554
 OMA Pairs 0.9074 +- 0.07731220.4475 +- 0.0931344
ClusterinOMA GETHOGs 0.9806 +- 0.03768710.8347 +- 0.0935984
 OMA Groups 0.9744 +- 0.04960780.6281 +- 0.121788
 OMA Pairs 0.9806 +- 0.03768710.8347 +- 0.0935984
GH14OMA GETHOGs 0.75 +- 0.4243520.5 +- 0.400083
 OMA Groups 0.6667 +- 0.5334440.3333 +- 0.377202
 OMA Pairs 0.75 +- 0.4243520.5 +- 0.400083
HOXOMA GETHOGs 0.9683 +- 0.06122670.3427 +- 0.0986049
 OMA Groups 0.9608 +- 0.07534050.2753 +- 0.092797
 OMA Pairs 0.9355 +- 0.08648240.3258 +- 0.0973745
MAPTOMA GETHOGs 0.9649 +- 0.06755460.6707 +- 0.143851
 OMA Groups 0.9649 +- 0.06755460.6707 +- 0.143851
 OMA Pairs 0.9649 +- 0.06755460.6707 +- 0.143851
NOXOMA GETHOGs 0.9626 +- 0.02626620.823 +- 0.0488477
 OMA Groups 0.9563 +- 0.03567580.5139 +- 0.0639717
 OMA Pairs 0.9807 +- 0.0200620.7569 +- 0.0549006
POPOMA GETHOGs 0.9896 +- 0.02020510.8451 +- 0.0667051
 OMA Groups 0.9323 +- 0.05025940.792 +- 0.0748315
 OMA Pairs 0.9526 +- 0.04271720.8009 +- 0.0736298
PSENOMA GETHOGs 0.9946 +- 0.008673750.8109 +- 0.0417139
 OMA Groups 0.9917 +- 0.0161980.353 +- 0.0509125
 OMA Pairs 0.991 +- 0.0123740.6529 +- 0.0507148
RPSOMA GETHOGs 0.9643 +- 0.06873870.4576 +- 0.127126
 OMA Groups 0.931 +- 0.1304280.2288 +- 0.107189
 OMA Pairs 0.9672 +- 0.06319990.5 +- 0.127585
SERCOMA GETHOGs 0.9701 +- 0.01739860.9107 +- 0.0282288
 OMA Groups 0.9894 +- 0.02073990.2372 +- 0.0421117
 OMA Pairs 0.9881 +- 0.01241870.7398 +- 0.0434338
SUMFOMA GETHOGs 0.9545 +- 0.08704250.7925 +- 0.154411
 OMA Groups 0.9623 +- 0.07255340.9623 +- 0.0725534
 OMA Pairs 0.9615 +- 0.07392060.9434 +- 0.0879839
TRFEOMA GETHOGs 0.9875 +- 0.02434660.9349 +- 0.0525974
 OMA Groups 0.9839 +- 0.03135690.7219 +- 0.0955367
 OMA Pairs 0.9875 +- 0.02434660.9349 +- 0.0525974
VATBOMA GETHOGs 0.9943 +- 0.0112320.8941 +- 0.0433643
 OMA Groups 0.9895 +- 0.0204160.4884 +- 0.0704317
 OMA Pairs 0.994 +- 0.01166650.8605 +- 0.0488229



Case Project pos. predictive value rate true positive rate Raw Data
TreeFamAOMA GETHOGs 0.8391 +- 0.005261750.6394 +- 0.00600269
 OMA Groups 0.951 +- 0.00420410.3917 +- 0.00610231
 OMA Pairs 0.9171 +- 0.004391620.5648 +- 0.00619785